The SED-ML specification is written by an editorial board consisting of five editors. They are elected by the SED-ML community (members of the sed-ml-discuss mailing list) and serve for 3-year terms as volunteers. SED-ML editors are responsible for hosting all material relevant to SED-ML, coordinating the SED-ML development, maintaining the SED-ML website and the SED-ML specification documents.
Frank Bergmann (2020-2022; 2011-2014)
Frank T. Bergmann (PhD. in Computational and Systems Biology) is a researcher at the University of Heidelberg where he is one of the core developers of COPASI, a simulation and modeling environment supporting the COMBINE standards. He also maintains several open source projects, supporting the use of the COMBINE standards.
Tomas Helikar (2021-2023)
Dr. Helikar is an Associate Professor in the Department of Biochemistry at the University of Nebraska - Lincoln. His research expertise is in computational systems biology, technology development, and STEM education.
Jonathan Karr (2021-2023)
Jonathan Karr is an Assistant Professor in the Department of Genetics and Genomic Sciences at the Icahn School of Medicine at Mount Sinai. The goal of Jonathan's research is to develop comprehensive whole-cell models of all of the biochemical activity inside cells to enable a predictive foundation for medicine and bioengineering analogous to the Newtonian foundation for mechanical engineering.
Matthias König (2020-2022; 2017-2019)
Matthias König (PhD. in Biophysics) leads an junior research group for Systems Biology and Systems Medicine of the liver at the Humboldt University Berlin. His research areas include computational modeling, data science, development of bioinformatics methods and machine learning based on biological, medical and clinical data. He has been actively involved in the development of SBML, SED-ML and software supporting these standards: Lead-developer of cy3sbml and sbmlutils; contributor of the SBML simulation software libroadrunner and tellurium.
Lucian Smith (2022-2024; 2016-2018)
Lucian Smith (PhD. in Biochemistry) works as a Research Scientist for both the University of Washington with the Sauro lab as a Roadrunner and Tellurium developer, and has worked for Caltech with the SBML Team. He is the co-creator of Antimony and phraSED-ML, has been an SBML editor, and has developed a variety of SBML package specifications.
The editors meet regularly in online meetings and during the yearly COMBINE and HARMONY meetings.
HARMONY2017
Meeting in Seattle, WA, US during HARMONY2017. Getting ready for the L1V3 release.
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