Language URNs

The following languages have to our knowledge so far been used with SED-ML. To specify the language of a model in the Model class, please use the according URN given. The general scheme for a language URN in SED-ML is urn:sedml:language:language name and version.

Language URN Specification URL
CellML (generic) urn:sedml:language:cellml
CellML 1.0 urn:sedml:language:cellml.1_0
CellML 1.1 urn:sedml:language:cellml.1_1
NeuroML (generic) urn:sedml:language:neuroml
NeuroML Version 1.8.1 Level 1 urn:sedml:language:neuroml.version-1_8_1.level-1
NeuroML Version 1.8.1 Level 2 urn:sedml:language:neuroml.version-1_8_1.level-2
SBML (generic) urn:sedml:language:sbml
SBML Level 1 Version 1 urn:sedml:language:sbml.level-1.version-1
SBML Level 1 Version 2 urn:sedml:language:sbml.level-1.version-2
SBML Level 2 Version 1 urn:sedml:language:sbml.level-2.version-1
SBML Level 2 Version 2 urn:sedml:language:sbml.level-2.version-2
SBML Level 2 Version 3 urn:sedml:language:sbml.level-2.version-3
SBML Level 2 Version 4 urn:sedml:language:sbml.level-2.version-4
SBML Level 2 Version 5 urn:sedml:language:sbml.level-2.version-5
SBML Level 3 Version 1 urn:sedml:language:sbml.level-3.version-1
SBML Level 3 Version 2 urn:sedml:language:sbml.level-3.version-2
VCML (generic) urn:sedml:language:vcml

Data Format URNs

To specify the format of a resource please use the according URN given. The general scheme for a format URN in SED-ML is urn:sedml:format:format name.

Data Format URN
NuML (generic) urn:sedml:format:numl
NuML Level 1 Version 1 urn:sedml:format:numl.level-1.version-1
CSV urn:sedml:format:csv
TSV urn:sedml:format:tsv

Predefined Symbols

As described in the SED-ML specification some modeling languages use predefined symbols or implicit variables. In order to handle such variables the SED-ML introduced symbol URNs. The general scheme for a symbol URN in SED-ML is urn:sedml:symbol:symbolName.

Language URN Definition
SBML urn:sedml:symbol:time Time in SBML is an intrinsic model variable that is addressable in model equations via a csymbol 'time'.

© 2017 Report website issue